CLI¶
Commands¶
| Command | Purpose |
|---|---|
run |
Start a new full pipeline run |
run-stage |
Run a single stage |
resume |
Continue a run; optional --from-stage / --until-stage |
status |
Show stage statuses from SQLite |
show |
Inspect the primary artifact for a stage |
stages |
List stages and primary artifacts |
list-runs |
List recent runs |
ingest-pdfs |
Register manually downloaded PDFs |
merge-filtered |
Merge papers_filtered.parquet from another run |
reset-stage |
Clear artifacts and mark a stage pending |
normalize-manifests |
Rewrite absolute paths in manifests to run-relative |
Common usage¶
litcurate run-stage <stage> --run-id $RUN_ID --config $CONFIG
litcurate run-stage <stage> --run-id $RUN_ID --config $CONFIG --force
litcurate resume $RUN_ID --from-stage extract_schema --until-stage export
litcurate status $RUN_ID
litcurate show extract_schema $RUN_ID
marker-pdf is included in the base install.