Artifacts and resume¶

Each run lives under:

runs/<RUN_ID>/
  run.db                 # SQLite status / resume
  config.snapshot.yaml   # frozen config for this run
  artifacts/             # stage outputs
  logs/

Primary artifacts¶

Stage	Primary artifact
`query_generation`	`artifacts/queries.json`
`openalex_search`	`artifacts/openalex_raw/`
`merge_rank`	`artifacts/papers_ranked.parquet`
`filter_abstracts`	`artifacts/papers_filtered.parquet`
`download_pdfs`	`artifacts/download_manifest.json`
`convert_marker`	`artifacts/convert_manifest.json`
`clean_markdown`	`artifacts/clean_manifest.json`
`pre_extract`	`artifacts/pre_extract_manifest.json`
`filter_fulltext`	`artifacts/fulltext_filter_manifest.json`
`extract_schema`	`artifacts/extract_manifest.json`
`export`	`artifacts/output/database.json`

Per-paper extractions: artifacts/extractions/<paper_id>/*.json.

Resume and reset¶

litcurate resume $RUN_ID
litcurate resume $RUN_ID --from-stage extract_schema
litcurate reset-stage extract_schema --run-id $RUN_ID

reset-stage clears that stage’s artifacts (and can clear downstream stages) and marks them pending.